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Publications et Communications



contribution de la plateforme

- Joevin Sourdon, Franck Lager, Thomas Viel, Daniel Balvay, Rebecca Moorhouse, Evangeline Bennana, Gilles Renault, Pierre-Louis Tharaux, Neeraj Dhaun, Bertrand Tavitian
Cardiac Metabolic Deregulation Induced by the Tyrosine Kinase Receptor Inhibitor Sunitinib is rescued by Endothelin Receptor Antagonism
Theranostics 2017 ; 7(11):2757-2774. doi : 10.7150/thno.19551 Analyse quantitative Label-free de tissu cardiaque et analyse ontologique

- Sicot G, Servais L, , Dinca D, Leroy A, Prigogine C, Braz SO, Dan B, Medja F, Chhuon C, Huguet A, Nicole A, Gueriba N, Guerrera IC, Cheron G, Gourdon G, Gomes-Pereira M. 
Upregulation of glial GLT1 glutamate transporter corrects Purkinje cell dysfunction in a mouse model of myotonic dystrophy.
Cell Rep. 2017 Jun 27 ;19(13):2718-2729. doi : 10.1016/j.celrep.2017.06.006

- Gomez Zepeda D, Chavez C, Taghi M ; Sergent P, Liu W, Chhuon C, Vidal M, Picard M, Thioulouse E, Broutin I, Guerrera IC, Scherrmann JM, Parmentier Y, Decleves X, Menet MC.
Targeted unlabeled MRM analysis of cell markers for the study of sample heterogeneity in isolated rat brain cortical microvessels.
J. Neurochem. 2017 Jun 5. doi : 10.1111/jnc.14095

- Maïssa N, Covarelli V, Janel S, Durel B, Simpson N, Bernard SC, Pardo-Lopez L, Bouzinba-Ségard H, Faure C, Scott MGH, Coureuil M, Morand PC, Lafont F, Nassif X, Marullo S, Bourdoulous S.
Strength of Neisseria meningitidis binding to endothelial cells requires highly-ordered CD147/β2-adrenoceptor clusters assembled by alpha-actinin-4.
Remerciements dans Nat Commun. 2017 Jun 1 ;8:15764. doi : 10.1038/ncomms15764 Analyse de partenaires issus de Co-IP sélectionnés sur gel et analysés en LC-MALDI TOF TOF

- Moretti C, Serrentino ME, Ialy-Radio C, Delessard M, Soboleva TA, Tores F, Leduc M, Nitschké P, Drevet JR, Tremethick DJ, Vaiman D, Kocer A, Cocquet J.
SLY regulates genes involved in chromatin remodeling and interacts with TBL1XR1 during sperm differentiation.
Cell Death Differ. May 5 doi : 10.1038/cdd.2017.32. Analyse de partenaires issus de Co-IP

- Brusson M, Cochet S, Leduc M, Guillonneau F, Mayeux P, Peyrard T, Chomienne C, Le Van Kim C, Cassinat B, Kiladjian JJ, El Nemer W.
Enhanced calreticulin expression in red cells of polycythemia vera patients harboring the JAK2V617F mutation
Haematologica Apr 6. pii : haematol.2016.161604. doi : 10.3324/haematol.2016.161604 iTRAQ relative quantification of erythrocyte membrane proteins (ghosts)

- Pauline Jeannot, Ada Nowosad, Renaud T. Perchey, Caroline Callot, Evangeline Bennana, Takanori Katsube, Patrick Mayeux, François Guillonneau, Stéphane Manenti and Arnaud Besson
p27Kip1 promotes invadopodia turnover and invasion through the regulation of the PAK1/Cortactin pathway
Elife 6. pii : e22207. doi : 10.7554/eLife.22207 identification de phosphosites sur protéines surexprimées

- Régent A, Ly KH, Groh M, Khifer C, Lofek S, Clary G, Chafey P, Baud V, Broussard C, Federici C, Labrousse F, Mesturoux L, Le Jeunne C, Vidal E, Brezin A, Witko-Sarsat V, Guillevin L, Mouthon L.
Molecular analysis of vascular smooth muscle cells from patients with giant cell arteritis : Targeting endothelin-1 receptor to control proliferation.
Autoimmun Rev. pii : Apr ;16(4):398-406. doi : 10.1016/j.autrev.2017.02.006. Review. Analyse quantitative relative par 2D DIGE et analyse ontologique

- Meijer BM, Jang SM, Guerrera IC, Chhuon C, Lipecka J, Reisacher C, Baleux F, Sansonetti P, Muchardt C, Arbibe L.
Threonine eliminylation by bacterial phosphothreonine lyases rapidly causes crosslinking of MAPK in live cells
J Biol Chem. Mar 21. pii : jbc.M117.775940. doi : 10.1074/jbc.M117.775940

- Dambrun M, Dechavanne C, Emmanuel A, Aussenac F, Leduc M, Giangrande C, Vinh J, Dugoujon JM, Lefranc MP, Guillonneau F*, Migot-Nabias F*. (*co last authors)
Human immunoglobulin heavy gamma chain polymorphisms : molecular confirmation of proteomic assessment.
Mol Cell Proteomics pii : mcp.M116.064733. doi : 10.1074/mcp.M116.064733. Determination of IgHG-1, -2, -3 and -4 heavy chains polymorphism

- Cécile Naudin, Aurore Hattabi, Fabio Michelet, Ayda Miri-Nezhad, Aissa Benyoucef, Françoise Pflumio, François Guillonneau, Serge Fichelson, Isabelle Vigon, Isabelle Dusanter-Fourt and Evelyne Lauret
PUMILIO/FOXP1 signaling drives expansion of hematopoietic stem/progenitor and leukemia cells
Blood pii : blood-2016-10-747436 ; doi:10.1182/blood-2016-10-747436 Analyse quantitative relative par SILAC de lignées sh pumilio et analyse ontologique

- Leclerc, E., Kimura, K., Shinohara, M., Danoy, M., Le Gall, M., Kido, T., Miyajima, A., Fujii, T., Sakai, Y.
Comparison of the transcriptomic profile of hepatic human induced pluripotent stem like cells cultured in plates and in a 3D microscale dynamic environment
Genomics 109(1):16-26 DOI:10.1016/j.ygeno.2016.11.008 Analyse ontologique

- William André, Isabelle Nondier, Maud Valensi, François Guillonneau, Christian Federici, Guylaine Hoffner, Philippe Djian
Identification of brain substrates of transglutaminase by functional proteomics supports its role in neurodegenerative diseases
Neurobiology of Disease doi:10.1016/j.nbd.2017.01.007 LC-MS identification of transglutaminase substrates captured by affinity purification (AP-MS)

- Nathalie Nevo, Lucie Thomas, Cerina Chhuon, Zuzanna Andrzejewska, Joanna Lipecka, Francois Guillonneau, Anne Bailleux, Aleksander Edelman, Corinne Antignac, and Ida Chiara Guerrera
Impact of cystinosin glycosylation on protein stability by differential dynamic SILAC
Mol Cell Proteomics doi:10.1074/mcp.M116.0638676pulsed SILAC experiment to determine protein turnover


- Naissant B, Dupuy F, Duffier Y, Lorthiois A, Duez J, Scholz J, Buffet P, Merckx A, Bachmann A, Lavazec C.
Plasmodium falciparum STEVOR phosphorylation regulates host erythrocyte deformability enabling malaria parasite transmission.
Remerciements in Blood 127:e42-e53 ; doi:10.1182/blood-2016-01-690776. Analyse de partenaires issus de Co-IP

- Ohlmann P, Hechler B, Chafey P, Ravanat C, Isola H, Wiesel ML, Cazenave JP, Gachet C.
Hemostatic properties and protein expression profile of therapeutic apheresis plasma treated with amotosalen and ultraviolet A for pathogen inactivation.
Transfusion  ;56(9):2239-47. doi : 10.1111/trf.13670.

- Mouchi V, Lartaud F, Guichard N, Immel F, de Rafélis M, Broussard C, Crowley Q, Marin F.
Chalky versus foliated : a discriminant immunogold labelling of shell microstructures in the edible oyster Crassostrea gigas.
Marine Biology 163:256 DOI 10.1007/s00227-016-3040-6 identifications de protéines issues de SDS PAGE

- Ohayon D, De Chiara A, Chapuis N, Candalh C, Mocek J, Ribeil J-A, Haddaoui L, Ifrah N, Hermine O, Bouillaud F, Frachet P, Bouscary D, Witko-Sarsat V.
Cytoplasmic proliferating cell nuclear antigen connects glycolysis and cell survival in acute myeloid leukemia.
Remerciements dans Scientific Reports 6, Article number : 35561 (2016) doi:10.1038/srep35561 Affinity purification-MS ou identification de protéines partenaires par Co-ImmunoPurification

- Chhuon C, Pranke I, Borot F, Tondelier D, Lipecka J, Fritsch J, Chanson M, Edelman A, Ollero M, Guerrera IC
Changes in lipid raft proteome upon TNF-α stimulation of cystic fibrosis cells.
J Proteomics . 145:246-53. doi : 10.1016/j.jprot.2016.07.003.

- Tiotiu A, Brazdova A, Longé C, Gallet P, Morisset M, Leduc V, Hilger C, Broussard C, Couderc R, Sutra JP, Sénéchal H, Poncet P.
Urtica dioica pollen allergy : clinical, biological and allergomics analysis.
Annals of Allergy, Asthma & Immunology . Volume 117, Issue 5, November 2016, Pages 527–534. Doi:10.1016/j.anai.2016.09.426 identifications de protéines issues de SDS PAGE

- Régent A, Ly K, Lofek S, Clary G, Tamby M, Tamas N, Federici C, Broussard C, Chafey P, Liaudet-Coopman E, Humbert M, Perros F, Mouthon L.
Proteomic analysis of vascular smooth muscle cells in physiological condition and in pulmonary arterial hypertension : toward contractile versus synthetic phenotypes.
Proteomics doi : 10.1002/pmic.201500006. 2D-DIGE.

- Emilie-Fleur Gautier, Sarah Ducamp, Marjorie Leduc, Virginie Salnot, François Guillonneau, Michael Dussiot, John Hale, Marie-Catherine Giarratana, Anna Raimbault, Luc Douay, Catherine Lacombe, Narla Mohandas, Frédérique Verdier, Yael Zermati, Patrick Mayeux
Comprehensive Proteomic Analysis of Human Erythropoiesis
Cell Reports 16, 1–15, August 2, DOI:10.1016/j.celrep.2016.06.085 analyse quantitative globale des changements cellulaires par "label-free" et iTRAQ

- Lipecka J., Chhuon C., Bourderioux M., Bessard M.A., van Endert Peter, Edelman A., Guerrera I.C.
Sensitivity of mass spectrometry analysis depends on the shape of the filtration unit used for filter aided sample preparation (FASP).
Proteomics , doi : 10.1002/pmic.201600103 Optimisation de protocole de préparation d’échantillons

- Gwladys I. Bertin, Audrey Sabbagh, Nicolas Argy, Virginie Salnot, Sem Ezinmegnon, Gino Agbota, Yélé Ladipo, Jules M. Alao, Gratien Sagbo, François Guillonneau, Philippe Deloron
Proteomic analysis of Plasmodium falciparum parasites from patients with cerebral and uncomplicated malaria
Scientific Reports Jun 1 ;6:26773 DOI : 10.1038/srep26773. Comparaison de contenus en protéines issues d’hématies parasitées

- Maravic A, Cvjetan S, Konta M, Ladouce R, Martin F.A.
Proteomic response of a β-lactamases-producing Enterobacter cloacae complex strain to cefotaxime-induced stress.
Remerciements dans Pathogens and Disease DOI : 10.1093/femspd/ftw045 identifications de protéines issues de 2D-DIGE.

- Nikolic A, Peric M, Ladouce R, Mikecin A.M, Martin F.A, Kralj M, Krisko A and Radman M. 
Death by UVC Light Correlates with Protein Damage in Isogenic Human Tumor Cells : Primary Tumor SW480 versus its Metastasis SW620.
Journal of Proteomics & Computational Biology 2(1), 12 . identifications de protéines issues de 2D-DIGE.

- Hichem Lahouassa, Marie-Lise Blondot, Lise Chauveaud, Ghina Chouguia, Marina Morela, Marjorie Leduc, François Guillonneau, Bertha Cecilia Ramirez, Olivier Schwartz and Florence Margottin-Goguet
HIV-1 Vpr degrades the HLTF DNA translocase in T cells and macrophages
Proc Natl Acad Sci U S A 113(19):5311-6. DOI : DOI:10.1073/pnas.1600485113 Analyse quantitative relative par SILAC

- Immel F, Broussard C, Catherinet B, Plasseraud L, Alcaraz G, Bundeleva I and Marin F.
The shell of the invasive bivalve species Dreissena polymorpha : biochemical, elemental and textural investigations.
PLOS ONE DOI:10.1371/journal.pone.0154264

- Berthelot V, Mouta-Cardoso G, Hégarat N, Guillonneau F, François JC, Giovannangeli C, Praseuth D, and Rusconi F
The human DNA ends proteome uncovers an unexpected entanglement of functional pathways.
Nucl. Acids Res. 44(10):4721-33 DOI:10.1093/nar/gkw121 Identification de composition de complexes proteiques issus de BN PAGE.

- Pieri L, Chafey P, Le Gall M, Clary G, Melki R, Redeker V.
Cellular response of human neuroblastoma cells to α-synuclein fibrils, the main constituent of Lewy bodies.
Biochim Biophys Acta . 2016 Jan ;1860(1 Pt A):8-19. DOI:10.1016/j.bbagen.2015.10.007.


- Andrzejewska Z, Nevo N, Thomas L, Chhuon C, Bailleux A, Chauvet V, Courtoy PJ, Chol M, Guerrera IC, Antignac C.
Cystinosin is a Component of the Vacuolar H+-ATPase-Ragulator-Rag Complex Controlling Mammalian Target of Rapamycin Complex 1 Signaling.
J Am Soc Nephrol. 2015 Oct 8 doi : 10.1681/ASN.2014090937.

- B Hechler, C Ravanat, P Ohlmann, A Eckly, M Leduc, F Guillonneau, H Isola, C Gachet
L’inactivation des pathogènes par la technologie Intercept® préserve l’ultrastructure et les propriétés biochimiques des plaquettes au cours de leur conservation en vue de transfusion.
Transfusion Clinique et Biologique 2015 sep 30 22(4) p222 doi : 10.1016/j.tracli.2015.06.026 Analyse quantitative du protéome des plaquettes par iTRAQ et ESI MS/MS

- Aoufouchi S, De Smet A, Delbos F, Gelot C, Guerrera IC, Weill JC, Reynaud CA.
129-Derived Mouse Strains Express an Unstable but Catalytically Active DNA Polymerase Iota Variant.
Remerciements dans Mol Cell Biol. 2015 Sep 1 ;35(17):3059-70. Analyses LC-MALDI MS/MS

- Parker A, Immel F, Guichard N, Broussard C, Marin F.
Thermal stability of nacre proteins of the Polynesian pearl oyster : a proteomic study.
Key Engineering Materials Vol. 672 (2015) pp 222-231. Electrophorèse.

- Dutoit-Lefèvre V, Dubucquoi S, Launay D, Dussart P, Chafey P, Broussard C, Duban-Deweer S, Vermersch P, Prin L, Lefranc D.
An Optimized Fluorescence-Based Bidimensional Immunoproteomic Approach for Accurate Screening of Autoantibodies.
Plos One 10.1371/journal.pone.0132142. 2D-DIGE.

- Toubiana J, Rossi AL, Belaidouni N, Grimaldi D, Pene F, Chafey P, Comba B, Camoin L, Bismuth G, Claessens YE, Mira JP, Chiche JD.
Src-family-tyrosine kinase Lyn is critical for TLR2-mediated NF-kappaB activation through the PI 3-kinase signaling pathway.
Innate Immunity 2015 Jun 8. pii : 1753425915586075.

- Hyzewicz J, Tanihata J, Kuraoka M, Ito N, Miyagoe-Suzuki Y, Takeda S.
Low intensity training of mdx mice reduces carbonylation and increases expression levels of proteins involved in energy metabolism and muscle contraction.
Remerciements dans Free Radical Biology and Medecine 2015, (82) p122-136. Electrophorèse 2D

- Bardot C, Besse-Hoggan P, Carles L, Le Gall M, Clary G, Chafey P, Federici C, Broussard C, Batisson I.
How the edaphic Bacillus megaterium strain Mes11 adapts its metabolism to the herbicide mesotrione pressure.
Environmental Pollution Volume 199, April 2015, Pages 198–208, doi:10.1016/j.envpol.2015.01.029. 2D-DIGE.

- Ramond E, Gesbert G, Guerrera IC, Chhuon C, Dupuis M, Rigard M, Henry T, Barel M, Charbit A.
Importance of host cell arginine uptake in Francisella phagosomal escape and ribosomal protein amounts.
Mol Cell Proteomics. 2015 ; 14(4):870-81 label-free quantification

- M. Colombat, S. Holifanjaniaina, S. Onifarasoaniaina, S. Valleix, H. Maisonneuve,J.E. Kahn, la plateforme protéomique de l’université Paris Descartes (3P5)*
La protéomique, une nouvelle technique pour un typage optimal des amyloses
Rev Med Interne. 2015 ;36(5):346-51 Identification de protéines responsables de pathologies cliniques à dépôts de protéines *Guillonneau F, Leduc M, Broussard C, Salnot V.

- Bourderioux M, Nguyen-Khoa T, Chhuon C, Jeanson L, Tondelier D, Walczak M, Ollero M, Bekri S, Knebelmann B, Escudier E, Escudier B, Edelman A, Guerrera IC.
A new workflow for proteomic analysis of urinary exosomes and assessment in cystinuria patients.
J Proteome Res. 2015 ; 14(1):567-77.

- Krishna C Vallabhaneni, Patrice Penfornis, Santosh Dhule, Francois Guillonneau, Kristen V. Adams, Yin Yuan Mo, Rui Xu, Yiming Liu, Kounosuke Watabe, Mohan C Vemuri and Radhika Pochampally.
Extracellular vesicles from bone marrow mesenchymal stem/stromal cells transport tumor regulatory microRNA, proteins, and metabolites.
Oncotarget 2015 Mar 10 ;6(7):4953-67 analyse de vésicules extracellulaires

- Kanold J, Immel F, Broussard C, Guichard N, Plasseraud L, Corneillat M, Alcaraz G, Brümmer F, Marin F.
The test skeletal matrix of the black sea urchin Arbacia lixula.
Comparative Biochemistry and Physiology Part D : Genomics and Proteomics. doi:10.1016/j.cbd.2014.12.002. Identification de protéines.

- Rogée S, Le Gall M, Chafey P, Bouquet J, Cordonnier N, Federici C, Pavio N.
Quantitative proteomics identifies host factors modulated during acute hepatitis E infection in swine model
J Virol. 2015 Jan 1 ;89(1):129-43 2D-DIGE.

- Sohm B, Immel F, Bauda P, Pagnout C.
Insight into the primary mode of action of TiO2 nanoparticles on Escherichia coli in the dark.
Remerciements dans Proteomics. 2015 Jan ;15(1):98-113. 2D-DIGE.


- Benas, P., Auzeil, N., Legrand, L., Brachet, F., Regazzetti, A. & Ries-Kautt, M. 
Weak protein–cationic co-ion interactions addressed by X-ray crystallography and mass spectrometry
Acta crystallographica. Section D, Biological crystallography (2014). 70, 2217-2231. résolution de structure d’adduits lysozyme-cation

- Gougelet A., Torre C., Veber P., Sartor C., Bachelot L., Denechaud P.D., Godard C., Moldes M., Burnol A.F. , Terris B., Guillonneau F., Ye T., Schwartz M., Braeuning A., Perret C., Colnot S.
T-cell factor 4 and β-catenin chromatin occupancies pattern liver zonal metabolism
Hepatology. 2014 Jun ;59(6):2344-57. Analyses de partenaires de la beta catenin

- Loc’h J, Blaud M, Réty S, Lebaron S, Deschamps P, Bareille J, Jombart J, Robert-Paganin J, Delbos L, Chardon F, Zhang E, Charenton C, Tollervey D, Leulliot N.
RNA mimicry by the fap7 adenylate kinase in ribosome biogenesis.
remerciements dans PLoS Biol. 2014 May 13 ;12(5) Analyses in-gel de composition de préribosomes

- Jeanson L, Guerrera IC, Papon JF, Chhuon C, Zadigue P, Prulière-Escabasse V, Amselem S, Escudier E, Coste A, Edelman A.
Proteomic analysis of nasal epithelial cells from cystic fibrosis patients.
remerciements dans PLoS One 2014 Sep 30 ;9(9):e108671

- Vidau C., Panek J., Texier C., Biron D., Belzunces L., Le Gall M., Broussard C., Delbac F., El Alaoui H.
Differential proteomic analysis of midguts from Nosema ceranae-infected honeybees reveals manipulation of key host functions.
J Invertebr Pathol. 2014 Sep ;121:89-96 2D-DIGE.

- Régent A, Lofek S, Dib H, Bussone G, Tamas N, Federici C, Broussard C, Guillevin L, Mouthon L.
Identification of target antigens of anti-endothelial cell antibodies in patients with anti-neutrophil cytoplasmic antibody-associated vasculitides : A proteomic approach.
Clinical Immunology pii : S1521-6616(14)00084-92D-DIGE.

- Ida Chiara Guerrera, Ivan Quetier, Rachid Fetouchi, Frederique Moreau, Christelle Vauloup-Fellous, Bouchra Lekbaby, Caroline Rousselot, Cerina Chhuon, Aleksander Edelman, Marine Lefevre, Jean-Claude Nicolas, Dina Kremsdorf, Jean Lacau Saint Guily and Patrick Soussan.
Regulation of Interleukin‑6 in Head and Neck Squamous Cell Carcinoma Is Related to Papillomavirus Infection
remerciements dans J Proteome Res. 2014 Feb 7 ;13(2):1002-11 Analyses quantitatives iTRAQ LC-MALDI MS/MS

- Mallat Y., Tritsch E., Ladouce R., Lorenz Winter D., Friguet B., Li Z., Mericskay M. 
"Proteome modulation in H9c2 cardiac cells by miR-378 and miR-378".
Remerciements dans Mol Cell Proteomics. 2014 Jan ;13(1):18-29 (2D-DIGE).

Toumi H, Boumaizaa M, Immel F, Sohm B, Felten V, Férard JF.
Effect of deltamethrin (pyrethroid insecticide) on two clones of Daphnia magna (Crustacea, Cladocera) : A proteomic investigation.
Remerciements dans Aquatic Toxicology 148(2014)40-47. 2D-DIGE.


- Bakala H., Ladouce R., Baraibar M.A., Friguet B.
"Differential expression and glycative damage affect specific mitochondrial proteins with aging in rat liver".
Remerciements dans BBA Molecular Basis of Disease. 1832, 12, 2013, 2057–67. (2D-DIGE)

- Prévilon M, Le Gall M, Chafey P, Federici C, Pezet M, Clary G, Broussard C, Guillonneau F, Mercadier JJ, Rouet-Benzineb P.
Comparative differential proteomic profiles of nonfailing and failing hearts after in vivo thoracic aortic constriction in mice overexpressing FKBP12.6.
Physiol Rep. 2013 Aug ;1(3):e00039. doi : 10.1002/phy2.39. (2D-DIGE)

- Gwladys.I Bertin ; Thomas Lavstsen ; Francois Guillonneau ; Justin Doritchamou ; Christian.W Wang ; Jakob.S Jespersen ; Sem Ezimegnon ; Nadine Fievet ; Jules.M Alao ; francis Lalya ; Achille Massougbodji ; Nicaise Tuikue Ndam ; Thor.G Theander ; Philippe Deloron
"Expression of the domain cassette 8 Plasmodium falciparum erythrocyte membrane protein 1 is associated with cerebral malaria in Benin"
PLoS One. 2013 Jul 29 ;8(7):e68368. doi : 10.1371/journal.pone.0068368 Protéines membranaires, label-free quantification

- M. Colombat, S. Holifanjaniaina, F. Guillonneau, H. Mal, S. Hirschi, M. Reynaud-Gaubert, M. Stern.
Mass spectrometry-based proteomic analysis : a good diagnostic tool for cystic lung light chain deposition disease.
Am J Respir Crit Care Med. 2013 Aug 1 ;188(3):404-5. doi : 10.1164/rccm.201301-0071LE Identification de protéines responsables de pathologies cliniques à dépôts de protéines

- Bertin G., Sabbagh A., Guillonneau F., Jafari-Guemouri S., Ezimegnon S., Federici C., Houkpatin B., Fievet N., Deloron P.
"Differential protein expression profiles between Plasmodium falciparum parasites isolated from subjects presenting with pregnancy-associated malaria and uncomplicated malaria in Benin"
J Infect Dis. (2013) doi : 10.1093/infdis/jit377 Protéines membranaires, label-free quantification, Bioanalyse

- Firrincieli D, Zúñiga S, Rey C, Wendum D, Lasnier E, Rainteau D, Braescu T, Falguières T, Boissan M, Cadoret A, Housset C, Chignard N.
Vitamin D nuclear receptor deficiency promotes cholestatic liver injury by disruption of biliary epithelial cell junctions in mice.
remerciements dans Hepatology. 2013 doi : 10.1002/hep.26453 SDS PAGE-bands identifications

- Dieppedale J., Gesbert G., Ramond E., Chhuon, C, Dubail I., Dupuis M., Guerrera I.C., Charbit A.
Possible links between stress defense and the tricarboxylic acid cycle in Francisella pathogenesis.
remerciements dans Molecular and Cellular Proteomics (doi:10.1074/mcp.M112.024794)

- Faure C, Morio B, Chafey P, Le Plénier S, Noirez P, Randrianarison-Huetz V, Cynober L, Aussel C, Moinard C.
Citrulline enhances myofibrillar constituants expression of skeletal muscle and induces a switch in muscle energy metabolism in malnourished aged rats.
Proteomics. 2013, 13, 2191-2201. doi : 10.1002/pmic.201200262. 2D-E

- Daulat A, Maurice P, Jockers R.
G Protein Coupled Receptors — Trafficking and Oligomerization Techniques for the Discovery of GPCR-Associated Protein Complexes
Remerciements dans Methods in Enzymology, Volume 521, 2013, 329–345, Analyses de partenaires de complexes protéiques

- Nikolov I.G., Joki N., Galmiche A., Nguyen-Khoa T., Guerrera I.C., Guillonneau F., Ivanovski O., Phan O., Maizel J., Marçon F., Benchitrit J., Lucas A., Edelman A., Lacour B., Drüeke T.B., Massy Z.A.
Farnesyltransferase inhibitor R115777 protects against vascular disease in uremic mice.
Atherosclerosis 2013 Jul ;229(1):42-51 Analyses de candidats issus de profiling sur billes

Identification of soluble 14-3-3ε as a new subchondral bone mediator involved in cartilage degradation in osteoarthritis.
Remerciements dans Arthritis & Rheumatism DOI 10.1002/art.37951 Analyse de secrétomes par iTRAQ

- D’allard D, Gay J, Descarpentries C, Frisan E, Adam K, Verdier F, Floquet C, Dubreuil P, Lacombe C, Fontenay M, Mayeux P, Kosmider O.
"Tyrosine Kinase Inhibitors Induce Down-Regulation of c-Kit by Targeting the ATP Pocket."
PLoS One. 2013 Apr 23 ;8(4) Analyse de phosphoprotéines par SILAC

- Deracinois B, Pottiez G, Chafey P, Teerlink T, Camoin L, Broussard C, Couraud PO, Ceccheli R, Karamanos Y, Flahaut C.
"Glial-cell-mediated re-induction of the blood-brain barrier phenotype in brain capillary endothelial cells : a differential gel electrophoresis study."
Proteomics. 2013 Apr ;13(7):1185-99 2D-DIGE

- Brégnard C, Zamborlini A, Leduc M, Chafey P, Camoin L, Saïb A, Benichou S, Danos O, Basmaciogullari S.
"Comparative Proteomic Analysis of HIV-1 Particles Reveals a Role for Ezrin and EHD4 in the Nef-dependent Increase of Virus Infectivity."
J Virol. 2013 Apr ;87(7):3729-40 Analyses quantitatives par iTRAQ

- Beilstein F., Bouchoux J., Rousset M., Demignot S.
Proteomic analysis of lipid droplets from Caco-2/TC7 enterocytes identifies novel modulators of lipid secretion.
remerciements dans PLoS One. 2013 ;8(1):e53017 Analyses quantitatives par iTRAQ


- Lasonder E, Green JL, Camarda G, Talabani H, Holder AA, Langsley G, Alano P. The Plasmodium falciparum schizont phosphoproteome reveals extensive phosphatidylinositol and cAMP-protein kinase A signaling. Remerciements dans J Proteome Res. 2012 Nov 2 ;11(11):5323-37 Analyse de résidu phosphorylés par une kinase parasitaire

- Dechavanne C, Guillonneau F, Chiappetta G, Sago L, Lévy P, Salnot V, Guitard E, Ehrenmann F, Broussard C, Chafey P, Le Port A, Vinh J, Mayeux P, Dugoujon JM, Lefranc MP, Migot-Nabias F. Mass Spectrometry Detection of G3m and IGHG3 Alleles and Follow-Up of Differential Mother and Neonate IgG3. PLoS One. 2012 ;7(9):e46097 1&2D-E, Label-free and immunoglobulin G variant analysis

- Le Grand F, Grifone R, Mourikis P, Houbron C, Gigaud C, Pujol J, Maillet M, Pagès G, Rudnicki M, Tajbakhsh S, Maire P. Six1 regulates stem cell repair potential and self-renewal during skeletal muscle regeneration. Remerciements dans J Cell Biol. 2012 Sep 3 ;198(5):815-32 analyses nanopro

- Hechler B, Ohlmann P, Chafey P, Ravanat C, Eckly A, Maurer E, Mangin P, Isola H, Cazenave JP, Gachet C. Preserved functional and biochemical characteristics of platelet components prepared with amotosalen and ultraviolet A for pathogen inactivation. Transfusion. 2012 Oct 15. 2D-DIGE

- Dib H, Chafey P, Clary G, Federici C, Le Gall M, Dwyer J, Gavard J, Tamas N, Bussone G, Broussard C, Camoin L, Witko-Sarsat V, Tamby M, Mouthon L. Proteomes of umbilical vein and microvascular endothelial cells reflect distinct biological properties and influence immune recognition. Proteomics 2012, Volume 12, Issue 15-16, pages 2547–2555. 2D-DIGE, Bioanalyse

- Valleix S., Gillmore J.D., Bridoux F., et coll. Hereditary systemic amyloidosis due to Asp76Asn variant β2-microglobulin. Remerciements dans N Engl J Med. 2012 Jun 14 ;366(24):2276-83 Identification de protéines responsables de pathologies cliniques à dépôts de protéines

- Buet D., Gallais I., Lauret E., Denis N., Lombard B., Guillonneau F., Kosmider O., Loew D., Dusanter-Fourt I., Guillouf C., Mayeux P., Moreau-Gachelin F. Cotargeting signaling pathways driving survival and cell cycle circumvents resistance to Kit inhibitors in leukemia. Blood. 2012 May 3 ;119(18):4228-41. analyses de phosphopeptides

- Davalieva K., Kiprijanovska S., Broussard C., Petrusevska G., Efremov G. Proteomic Analysis of Infiltrating Ductal Carcinoma Tissues by Coupled 2D DIGE/MS/MS Analysis. Molecular Biology, 2012, Vol. 46, No. 3, pp. 421–432. 2D-spots identifications

- Davalieva K., Kiprijanovska S., Noveski P., Plaseski T., Kocevska B., Broussard C., Plaseska-Karanfilska D. Proteomic analysis of seminal plasma in men with different spermatogenic impairment. Andrologia. 2012 Aug ;44(4):256-64 2D-spots identifications

- Davalieva K., Kiprijanovska S., Noveski P., Plaseski T., Kocevska B., Plaseska-Karanfilska D. "Human seminal plasma study : a search for male infertility biomarkers". Remerciements dans Balkan Journal of Medical Genetics. Supplement 15 (2012) 35-38. 2D-spots identifications

- Luissint AC, Federici C, Guillonneau F, Chrétien F, Camoin L, Glacial F, Ganeshamoorthy K, Couraud PO. Guanine nucleotide-binding protein Gαi2 : a new partner of claudin-5 that regulates tight junction integrity in human brain endothelial cells. J Cereb Blood Flow Metab. 2012 May ;32(5):860-73. Identification de composants de complexes protéiques, Bioanalyse

- Thirant C., Galan-Moya EM., Dubois LG., Pinte S, Chafey P., Broussard C., Varlet P., Devaux B., Soncin F., Gavard J., Junier MP., Chneiweiss H. Differential proteomic analysis of human glioblastoma and neural stem cells reveals HDGF as a novel angiogenic secreted factor. Stem Cells. 2012 May ;30(5):845-53 2D-DIGE

- Haste NM, Talabani H, Doo A, Merckx A, Langsley G, Taylor SS. Exploring the Plasmodium falciparum cyclic-adenosine monophosphate (cAMP)-dependent protein kinase (PfPKA) as a therapeutic target. Remerciements dans Microbes Infect. 2012 Aug ;14(10):838-50. Review Analyse de résidu phosphorylés par une kinase parasitaire

- Bussone, G., Tamby, M., Calzas, C., Kherbeck, N., Sahbatou, Y., Sanson, C., Ghazal, K., Dib, H., Weksler, B., Broussard C, Verrecchia, F., Yaici, A., Witko-Sarsat, V., Simonneau, G., Guillevin, L., Humbert, M., Mouthon, L. IgG from patients with pulmonary arterial hypertension and/or systemic sclerosis bind to vascular smooth muscle cell and induce cell contraction. Annals of the Rheumatic Diseases 2012 71:596-605. 2D-spots identification

- Choucha-Snouber L, Letourneur F, Chafey P, Broussard C, Monge M, Legallais C, Leclerc E. Analysis of transcriptomic and proteomic profiles demonstrates the improvement of the MDCK cell function in a renal microfluidic biochip. Biotechnol Prog. 2012 Mar-Apr ;28(2):474-84 2D-DIGE

- Jeanson L, Kelly M, Coste A, Guerrera IC, Fritsch J, Nguyen-Khoa T, Baudouin-Legros M, Papon JF, Zadigue P, Prulière-Escabasse V, Amselem S, Escudier E, Edelman A. Oxidative stress induces unfolding protein response and inflammation in nasal polyposis. Allergy. 2012 Mar ;67(3):403-12. Analyse quantitative iTRAQ

- Dib, H., Tamby, M., Bussone, G., Regent, A., Berezné, A., Lafine, C., Simonneau, G., Broussard C, Guillevin, L., Witko-Sarsat, V., Humbert, M., Mouthon, L. Targets of anti-endothelial cell antibodies in pulmonary hypertension and scleroderma. European Respiratory Journal 2012. 2D-spots identification

- Khemtemourian, L., Desbenoit, Nicolas., Mahesh, P., Chatterjee, Sunanda., Deschemin, J-C., Vaulont, S., Tomas, A., Sari, M-A., Artaud, I. "Synthesis and Biological Activity of Mouse Hepcidin Peptide Analogs Containing Three Disulfide Bridges : Manual and Microwave-Assisted Solid-Phase Peptide Synthesis. Remerciements dans "Protein and Peptide Letters". Volume 19, Number 2, February 2012 , pp. 219-227(9).


- Brezar V, Culina S, Østerbye T, Guillonneau F, Chiappetta G, Verdier Y, Vinh J, Wong FS, Buus S, Mallone R. T cells recognizing a peptide contaminant undetectable by mass spectrometry. PLoS One. 2011 ;6(12) séparation, concentration et identification de peptides contaminants

- Toubiana J, Rossi AL, Grimaldi D, Belaidouni N, Chafey P, Clary G, Courtine E, Pene F, Mira JP, Claessens YE, Chiche JD. IMPDHII protein inhibits Toll-like receptor 2-mediated activation of NF-kappaB. J Biol Chem. 2011 Jul 1 ;286(26):23319-33 2D-DIGE

- Thirant, C., Varlet, P., Lipecka, J., Le Gall, M., Broussard C, Chafey, P., Studler, JM., Lacombe, J., Lions, S., Guillaudeau, A., Camoin, L., Daumas-Duport, C., Junier, MP., Chneiweiss, H. Proteomic Analysis of Oligodendrogliomas Expressing a Mutant Isocitrate Dehydrogenase 1. Proteomics 2011. 2D-DIGE

- Regent, A., Dib, H., Ly, KH., Agard, C., Tamby, MC., Tamas, N., Weksler, B., Federici, C., Broussard C, Guillevin, L., Mouthon L. Identification of target antigens of anti-endothelial-cell and anti-vascular-smooth-muscle-cell antibodies in patients with giant cell arteritis : a proteomic approach. Arthritis Research & Therapy 2011, 13:R107. 2D-spots identification, Bioanalyse

- Prot JM, Briffaut AS, Letourneur F, Chafey P, Merlier F, Grandvalet Y, Legallais C, Leclerc E. Integrated proteomic and transcriptomic investigation of the acetaminophen toxicity in liver microfluidic biochip. PLoS One. 2011 ;6(8):e21268. doi : 10.1371/journal.pone.0021268 2D-DIGE

- Bussone, G., Dib, H., Tamby, M., Broussard C, Federici, C., Woimant, G., Camoin, L., Guillevin, L., Mouthon, L. Identification of new autoantibody specificities directed at proteins involved in the transforming growth factor beta pathway in patients with systemic sclerosis. Arthritis Research & Therapy 2011, 13:R74. 2D-spots identification, Bioanalyse

- Kahn JE, Dutoit-Lefevre V, Duban-Deweer S, Chafey P, Pottiez G, Lefranc D, Fain O, Cordier JF, Hatron PY, Bletry O, Prin L. Comparative proteomic analysis of blood eosinophils reveals redox signaling modifications in patients with FIP1L1-PDGFRA-associated chronic eosinophilic leukemia. J Proteome Res. 2011 Apr 1 ;10(4):1468-80. 2D-DIGE

- Bouchoux J, Beilstein F, Pauquai T, Guerrera IC, Chateau D, Ly N, Alqub M, Klein C, Chambaz J, Rousset M, Lacorte JM, Morel E, Demignot S. The proteome of cytosolic lipid droplets isolated from differentiated Caco-2/TC7 enterocytes reveals cell-specific characteristics. Remerciements dans Biol Cell. 2011 ;103(11):499-517 Analyses quantitatives par iTRAQ.


- Morales MA, Watanabe R, Dacher M, Chafey P, Osorio y Fortéa J, Scott DA, Beverley SM, Ommen G, Clos J, Hem S, Lenormand P, Rousselle JC, Namane A, Späth GF. Phosphoproteome dynamics reveal heat-shock protein complexes specific to the Leishmania donovani infectious stage. Proc Natl Acad Sci U S A. 2010 May 4 ;107(18):8381-6 2D-DIGE

- Auger, J., Eustache, F., Maceiras, P., Broussard C, Chafey, P., Lesaffre, C., Vaiman, D., Camoin, L., Auer, J. Modified expression of several sperm proteins after chronic exposure to the antiandrogenic compound vinclozolin Toxicol Sci 2010 ; 117(2):475-84 2D-DIGE

- Terrier, B., Tamby, M., Camoin, L., Guilpain, P., Bérezné, A., Tamas, N., Broussard C, Hotellier, F., Humbert, M., Simonneau, G., Guillevin, L., Mouthon, L. Antifibroblast antibodies from systemic sclerosis patients bind to α-enolase and are associated with interstitial lung disease. Ann Rheum Dis 2010 ;69:428-433. 2D-spots identification

- Auer, J., Camoin, L., Guillonneau, F., Rigourd, V., Chelbi, S. T., Leduc, M., Laparre, J., Mignot, T. M., Vaiman, D. (2010). Serum profile in preeclampsia and intra-uterine growth restriction revealed by iTRAQ technology. J Proteomics 2010 ; 73(5):1004-1017 Analyses quantitatives par iTRAQ


- Bellon S, Buchmann W, Gonnet F, Jarroux N, Anger-Leroy M, Guillonneau F, Daniel R. Hyphenation of surface plasmon resonance imaging to matrix-assisted laser desorption ionization mass spectrometry by on-chip mass spectrometry and tandem mass spectrometry analysis. Anal Chem. 2009 Sep 15 ;81(18):7695-702. Analyses MS/MS de protéines immobilisées sur chip SPR.

- Bussone, G., Dib, H., Dimitrov, J. D., Camoin, L., Broussard C, Tamas, N., Guillevin, L., Kaveri, S. V., and Mouthon, L. (2009). Identification of target antigens of self-reactive IgG in intravenous immunoglobulin preparations. Proteomics 2009, 9, 2253–2262. 2D-spots identification

- Tyagi, T. K., Ponnan, P., Singh, P., Bansal, S., Batra, A., Collin, F., Guillonneau, F., Jore, D., Patkar, S. A., Saxena, R. K., Parmar, V. S., Rastogi, R. C., Raj, H. G. (2009). Moonlighting protein in Starkeyomyces koorchalomoides : characterization of dihydrolipoamide dehydrogenase as a protein acetyltransferase utilizing acetoxycoumarin as the acetyl group donor Biochimie 2009 ; 91(7):868-75 Analyse d’acetylation de protéines

- Chafey, P., Finzi, L., Boisgard, R., Cauzac, M., Clary, G., Broussard C, Pegorier, J. P., Guillonneau, F., Mayeux, P., Camoin, L., Tavitian, B., Colnot, S., Perret, C. (2009). Proteomic analysis of beta-catenin activation in mouse liver by DIGE analysis identifies glucose metabolism as a new target of the Wnt pathway Proteomics 2009 ; 9(15):3889-3900 2D-DIGE

- Maurice, P., Daulat, A. M., Broussard C, Mozo, J., Clary, G., Hotellier, F., Chafey, P., Guillaume, J. L., Ferry, G., Boutin, J. A., Delagrange, P., Camoin, L., and Jockers, R. (2008). A generic approach for the purification of signaling complexes that specifically interact with the carboxyl-terminal domain of G protein-coupled receptors. Mol Cell Proteomics 7, 1556-1569. 2D-E pour l’analyse de complexes protéiques

- Servettaz, A., Guilpain, P., Camoin, L., Mayeux, P., Broussard C, Tamby, M. C., Tamas, N., Kaveri, S. V., Guillevin, L., and Mouthon, L. (2008b). Identification of target antigens of antiendothelial cell antibodies in healthy individuals : A proteomic approach. Proteomics 8, 1000-1008. 2D-spots identification

- Terrier, B., Tamby, M. C., Camoin, L., Guilpain, P., Broussard C, Bussone, G., Yaici, A., Hotellier, F., Simonneau, G., Guillevin, L., Humbert, M., and Mouthon, L. (2008). Identification of target antigens of antifibroblast antibodies in pulmonary arterial hypertension. Am J Respir Crit Care Med 177, 1128-1134. 2D-spots identification

- Guilpain, P., Servettaz, A., Tamby, M. C., Chanseaud, Y., Tamas, N., Garcia de la Pena-Lefebvre, P., Broussard, C., Guillevin, L., Camoin, L., and Mouthon, L. (2007). A combined SDS-PAGE and proteomics approach to identify target autoantigens in healthy individuals and patients with autoimmune diseases. Ann N Y Acad Sci 1109, 538-549. 2D-spots identification

- Daulat, A. M., Maurice, P., Froment, C., Guillaume, J. L., Broussard, C., Monsarrat, B., Delagrange, P., and Jockers, R. (2007). Purification and identification of G protein-coupled receptor protein complexes under native conditions. Mol Cell Proteomics 6, 835-844. 2D-E pour l’analyse de complexes protéiques

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